PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70929.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 254aa    MW: 28661.5 Da    PI: 10.9896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70929.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-52301581128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtd+elvv+yL++kv+g++ ++  +i+evd+yk++PwdLp+++  +++ewyfF++rd+ky++g+r+nr++ +gyWkatg dk+v  +  
  MLOC_70929.3  30 LPPGFRFHPTDDELVVHYLCRKVAGQPQPV-PIIAEVDLYKFNPWDLPERALFGSREWYFFTPRDRKYPNGSRPNRSAGTGYWKATGADKPVAPRes 125
                   79*************************999.88***************8777899*************************************99877 PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +g++vg+kk Lvfy+grap+g+ktdW+mheyr+
  MLOC_70929.3 126 GGRTVGIKKALVFYSGRAPRGVKTDWIMHEYRI 158
                   8999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-6026163IPR003441NAC domain
PROSITE profilePS5100555.80430206IPR003441NAC domain
PfamPF023652.3E-2731158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMTAMVKAEA MTAEAEGSSG RRDAEAELNL PPGFRFHPTD DELVVHYLCR KVAGQPQPVP  60
IIAEVDLYKF NPWDLPERAL FGSREWYFFT PRDRKYPNGS RPNRSAGTGY WKATGADKPV  120
APRESGGRTV GIKKALVFYS GRAPRGVKTD WIMHEYRIAQ ADRTPGKKGS LKSWTNGCCA  180
GCTTRRTTGT RSRWSRTWLW CRDRMGRSWT RWPPTPCPTA SRRTTPRRST TPPACSSSTT  240
ASWTWRSGRP GKAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-87171582140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649580.0AK364958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029L14.
GenBankAM5008530.0AM500853.1 Hordeum vulgare subsp. vulgare mRNA for putative NAC transcription factor (nac4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564478.11e-105PREDICTED: NAC domain-containing protein 68-like
SwissprotQ52QH47e-97NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLM0YMV00.0M0YMV0_HORVD; Uncharacterized protein
STRINGMLOC_70929.11e-124(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.13e-74NAC domain containing protein 102